Whole Exome

  • Panel Description
  • Test Description
  • CPT Codes

Panel Description

Whole Exome Sequencing is a patient-centric, phenotype-driven analyses designed to examine coding regions and splice junctions for thousands of genes, and report only the variants which are of plausible clinical relevance for your patient. Family history and clinical information is required for all Whole Exome orders. Trio analysis is also available and focuses on the proband of a familial trio (proband and parents). Familial testing can be expanded to include siblings and/or other relatives. Incidental or secondary findings which do not match the provided clinical information are not routinely reported. Inclusion of incidental findings can be requested by submitting a signed Informed Consent for Genetic Testing form. Only pathogenic or likely pathogenic variants identified in the 59 genes recommended by ACMG will be reported as incidental findings. This analysis is performed by Next Generation Sequencing (NGS) and is designed to examine coding regions and splicing junctions of nuclear-encoded genes enriched for clinical significance. Variants occurring in genes which do not match the provided clinical information are not routinely reported. Depending on the case specifics, this analysis may or may not include Sanger sequencing of promoter regions or other non-coding regions in select genes. Similarly, this analysis may or may not include examination of limited genes for repeat expansion(s), performed by repeat-primed PCR (rpPCR) and amplicon length analysis. This analysis does not include any methylation studies or evaluation of mitochondrial-encoded genes. All Whole Exome orders include Del/Dup analysis of phenotypically significant genes. Del/Dup analysis is designed to identify deletions or duplications which are two or more contiguous exons in size. Single exon deletions or duplications are not routinely detected by this assay, however may occasionally be identified. Deletions and duplications are reported at the exon level. Breakpoint locations are not analyzed. Del/Dup analysis will not be performed if a diagnosis or likely diagnosis is identified by sequencing. *Results are considered likely to be diagnostic if a single heterozygous likely pathogenic or pathogenic variant is identified in a gene with autosomal dominant inheritance, X-linked dominant inheritance, or X-linked recessive inheritance (in a genetically male sample). Results are also considered diagnostic/likely diagnostic if two likely pathogenic or pathogenic variants (including homozygosity for a single variant or compound heterozygosity for two variants) are identified in a gene with autosomal recessive inheritance or X-linked recessive inheritance.

Test Description

Print
  • Sequencing
  • Del/Dup
  • Rush / STAT
  • Exclude VUS
  • MCC
  • Duo/Trio
  • Prenatal
5 - 7 weeks
Call for details
Call for Details ( 20096 genes )
96% at 20x
Blood (two 4ml EDTA tubes, lavender top) or Extracted DNA (3ug in EB buffer) or Buccal Swab or Saliva (kits available upon request)
Exome/Complete Analysis is a phenotype-driven test for a single individual (proband only). Family history and clinical information are required for all Clinical Exome orders. Incidental or secondary findings which do not match the test indication or clinical phenotype are not regularly reported. All sequencing technologies have limitations. This analysis is performed by Next Generation Sequencing (NGS) and is designed to examine coding regions and splicing junctions. Although next generation sequencing technologies and our bioinformatics analysis significantly reduce the contribution of pseudogene sequences or other highly-homologous sequences, these may still occasionally interfere with the technical ability of the assay to identify pathogenic variant alleles in both sequencing and deletion/duplication analyses. Sanger sequencing is used to confirm variants with low quality scores and to meet coverage standards. If ordered, deletion/duplication analysis can identify alterations of genomic regions which include one whole gene (buccal swab specimens and whole blood specimens) and are two or more contiguous exons in size (whole blood specimens only); single exon deletions or duplications may occasionally be identified, but are not routinely detected by this test. Identified putative deletions or duplications are confirmed by an orthogonal method (qPCR or MLPA). This assay will not detect certain types of genomic alterations which may cause disease such as, but not limited to, translocations or inversions, most repeat expansions (eg. trinucleotides or hexanucleotides), alterations in most regulatory regions (promoter regions) or deep intronic regions (greater than 20bp from an exon). If performed, repeat expansion analysis may not elicit the precise number of repeats present in large expansions. This assay is not designed or validated for the detection of somatic or mosaic mutations.

CPT Code 81415x1

NOTE:  The CPT codes listed on the website are in accordance with Current Procedural Terminology, a publication of the American Medical Association. CPT codes are provided here for the convenience of our clients. Clients who bill for services should make the final decision on which codes to use.